Sequence Similarity Clusters for the Entities in PDB 1J78

Entity #1 | Chains: A,B
vitamin D binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8385
95 % 4 6 8472 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.5
PDBFlex
90 % 4 6 8386
70 % 4 6 8111
50 % 4 6 7409
40 % 4 6 6837
30 % 4 6 5963

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1KXP 2 D HUMAN VITAMIN D-BINDING PROTEIN 9606
2 1KW2 1 A, B Vitamin D-binding protein 9606
3 1MA9 1 A Vitamin D-binding protein 9606
4 1J78 1 A, B vitamin D binding protein 9606
5 1J7E 1 A, B vitamin D binding protein 9606
6 1LOT 1 A Vitamin D-binding protein 9606