Sequence Similarity Clusters for the Entities in PDB 1J6W

Entity #1 | Chains: A,B
AUTOINDUCER-2 PRODUCTION PROTEIN LUXS protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12984
95 % 1 2 12425 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 12221
70 % 2 4 6753
50 % 2 4 6249
40 % 7 10 2973
30 % 7 10 2785

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.