Sequence Similarity Clusters for the Entities in PDB 1J6T

Entity #1 | Chains: A
PTS SYSTEM, MANNITOL-SPECIFIC IIABC COMPONENT protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 16806
95 % 3 3 13062
90 % 3 3 12849
70 % 3 3 12081
50 % 3 3 10771
40 % 3 3 9700
30 % 3 3 8302
Entity #2 | Chains: B
Phosphocarrier protein HPr protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 14 3682
95 % 12 18 3134
90 % 12 18 3185
70 % 12 18 3132
50 % 12 18 3089
40 % 40 52 731
30 % 43 55 690

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures