Sequence Similarity Clusters for the Entities in PDB 1J5O

Entity #1 | Chains: T
5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 31033
95 % 243 248 85
90 % 243 248 90
70 % 243 248 108
50 % 244 249 144
40 % 244 249 160
30 % 244 249 179
Entity #4 | Chains: B
Reverse transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 32483
95 % 237 242 111
90 % 237 242 115
70 % 237 242 131
50 % 238 243 154
40 % 238 243 172
30 % 238 243 187
Entity #5 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40286
95 % 3 3 22844
90 % 66 67 369
70 % 2118 2280 1
50 % 4296 4619 1
40 % 4296 4619 1
30 % 5084 5440 1
Entity #6 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 27225
95 % 8 8 9127
90 % 8 8 9045
70 % 2082 2238 2
50 % 4297 4619 1
40 % 4297 4619 1
30 % 5085 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.