Sequence Similarity Clusters for the Entities in PDB 1J5O

Entity #1 | Chains: T
5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31479
95 % 243 248 89 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 243 248 94
70 % 243 248 113
50 % 244 249 149
40 % 244 249 164
30 % 244 249 180
Entity #4 | Chains: B
Reverse transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 32942
95 % 237 242 113 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 237 242 117
70 % 237 242 133
50 % 238 243 156
40 % 238 243 175
30 % 238 243 188
Entity #5 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40825
95 % 3 3 23138 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 66 67 373
70 % 2161 2327 1
50 % 4382 4713 1
40 % 4382 4713 1
30 % 5203 5567 1
Entity #6 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27581
95 % 8 8 9252 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 8 8 9157
70 % 2120 2280 2
50 % 4383 4713 1
40 % 4383 4713 1
30 % 5204 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.