Sequence Similarity Clusters for the Entities in PDB 1J5O

Entity #1 | Chains: T
5'-D(*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*C)-3' dna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
5'-D(*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*A)-3' dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Reverse transcriptase protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 29600
95 % 226 231 109
90 % 226 231 114
70 % 226 231 131
50 % 227 232 158
40 % 227 232 172
30 % 227 232 189
Entity #4 | Chains: B
Reverse transcriptase protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 30959
95 % 220 225 118
90 % 220 225 121
70 % 220 225 139
50 % 221 226 166
40 % 221 226 181
30 % 221 226 198
Entity #5 | Chains: L
ANTIBODY (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 38523
95 % 3 3 21776
90 % 62 63 379
70 % 1670 1766 2
50 % 4092 4347 1
40 % 4092 4347 1
30 % 4843 5126 1
Entity #6 | Chains: H
ANTIBODY (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25958
95 % 8 8 8685
90 % 8 8 8606
70 % 1979 2101 1
50 % 4093 4347 1
40 % 4093 4347 1
30 % 4844 5126 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.