Sequence Similarity Clusters for the Entities in PDB 1J5E

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 237 25
95 % 79 238 38
90 % 79 238 43
70 % 79 238 53
50 % 99 330 30
40 % 99 330 40
30 % 112 396 41
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 239 23
95 % 79 239 34
90 % 79 239 39
70 % 79 239 48
50 % 93 324 38
40 % 108 397 27
30 % 108 398 39
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 194 42
95 % 79 246 22
90 % 79 246 27
70 % 93 335 23
50 % 93 336 29
40 % 93 336 39
30 % 93 336 56
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 240 20
95 % 79 240 32
90 % 79 240 37
70 % 79 240 46
50 % 94 329 35
40 % 94 329 46
30 % 107 397 46
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 238 24
95 % 79 238 39
90 % 79 238 44
70 % 79 239 51
50 % 79 239 82
40 % 79 239 108
30 % 79 239 124
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 242 16
95 % 83 247 21
90 % 83 247 26
70 % 83 247 37
50 % 100 337 27
40 % 100 338 38
30 % 100 338 54
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 234 26
95 % 79 239 36
90 % 79 239 41
70 % 79 239 50
50 % 79 239 81
40 % 79 240 106
30 % 94 327 65
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 84 225
95 % 79 233 40
90 % 79 237 45
70 % 79 237 54
50 % 79 237 87
40 % 79 237 113
30 % 79 237 128
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 49 566
95 % 73 205 63
90 % 73 205 66
70 % 73 205 75
50 % 73 205 109
40 % 73 205 129
30 % 73 205 145
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 242 15
95 % 80 242 26
90 % 80 242 31
70 % 80 242 42
50 % 94 327 34
40 % 94 327 44
30 % 94 327 60
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 239 17
95 % 79 240 27
90 % 79 240 33
70 % 79 240 43
50 % 93 323 37
40 % 93 324 47
30 % 93 324 63
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 50 370
95 % 79 238 37
90 % 79 238 42
70 % 79 238 52
50 % 79 238 83
40 % 79 238 110
30 % 79 238 126
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 229 39
95 % 79 229 54
90 % 79 229 58
70 % 79 229 69
50 % 79 229 97
40 % 79 229 118
30 % 79 229 133
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 204 43
95 % 72 204 64
90 % 72 204 67
70 % 72 204 76
50 % 76 252 68
40 % 76 252 93
30 % 76 252 110
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 232 27
95 % 79 240 28
90 % 79 240 34
70 % 79 240 44
50 % 93 324 36
40 % 93 325 45
30 % 93 325 62
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 239 22
95 % 79 239 33
90 % 79 239 38
70 % 79 239 47
50 % 94 328 33
40 % 94 328 43
30 % 94 330 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 244 13
95 % 87 250 20
90 % 87 250 25
70 % 87 250 35
50 % 87 250 70
40 % 87 250 94
30 % 99 289 80
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 243 14
95 % 80 244 25
90 % 80 244 29
70 % 80 244 40
50 % 92 289 50
40 % 92 290 62
30 % 92 290 83
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 239 19
95 % 80 239 31
90 % 80 243 30
70 % 80 243 41
50 % 96 330 31
40 % 97 332 41
30 % 111 401 37
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 90 190
95 % 79 239 35
90 % 79 239 40
70 % 79 239 49
50 % 93 324 39
40 % 93 324 49
30 % 106 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.