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Structure of the Thermus thermophilus 30S Ribosomal Subunit
Sequence Clustering and Redundancy Reduction Results
1J5E
Sequence Clusters for the Sequence Entities in PDB 1J5E
Entity #1: Chains: A - 16S ribosomal RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 196 28
95% 59 197 44
90% 59 197 46
70% 59 197 58
50% 78 280 35
40% 78 280 45
30% 91 331 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 198 24
95% 59 198 40
90% 59 198 42
70% 59 198 54
50% 72 274 42
40% 87 330 35
30% 87 330 47
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 165 35
95% 59 205 31
90% 59 205 33
70% 72 286 24
50% 72 286 34
40% 72 286 44
30% 72 286 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 199 21
95% 59 199 37
90% 59 199 39
70% 59 199 51
50% 73 279 39
40% 73 279 51
30% 86 331 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 197 25
95% 59 197 45
90% 59 197 47
70% 59 197 59
50% 59 197 92
40% 59 197 114
30% 59 197 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 201 19
95% 63 206 30
90% 63 206 32
70% 63 206 43
50% 79 287 33
40% 79 287 43
30% 79 287 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 193 29
95% 59 198 42
90% 59 198 44
70% 59 198 56
50% 59 198 90
40% 59 198 112
30% 73 277 75
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 80 222
95% 59 192 49
90% 59 196 48
70% 59 196 60
50% 59 196 93
40% 59 196 116
30% 59 196 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 49 505
95% 56 174 71
90% 56 174 75
70% 56 174 88
50% 56 174 128
40% 56 174 146
30% 56 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 176 45
95% 56 176 67
90% 56 176 70
70% 56 176 83
50% 73 277 38
40% 73 277 48
30% 73 277 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 198 22
95% 59 199 34
90% 59 199 37
70% 59 199 48
50% 59 199 88
40% 72 274 53
30% 72 274 74
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 49 355
95% 59 197 43
90% 59 197 45
70% 59 197 57
50% 59 197 91
40% 59 197 113
30% 59 197 136
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 188 31
95% 59 188 51
90% 59 188 54
70% 59 188 66
50% 59 188 111
40% 59 188 133
30% 59 188 153
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 173 48
95% 55 173 72
90% 55 173 76
70% 55 173 90
50% 58 213 75
40% 58 213 102
30% 58 213 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 191 30
95% 59 199 35
90% 59 199 38
70% 59 199 49
50% 72 274 40
40% 72 275 52
30% 72 275 73
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 198 23
95% 59 198 39
90% 59 198 41
70% 59 198 53
50% 73 278 37
40% 73 278 47
30% 73 280 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 203 17
95% 67 209 29
90% 67 209 31
70% 67 209 42
50% 67 209 80
40% 67 209 106
30% 79 247 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 202 18
95% 60 203 32
90% 60 203 34
70% 60 203 45
50% 72 245 53
40% 72 246 70
30% 72 246 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 198 20
95% 60 198 36
90% 60 202 35
70% 60 202 46
50% 75 280 36
40% 76 282 46
30% 90 335 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 90 156
95% 59 198 41
90% 59 198 43
70% 59 198 55
50% 72 274 41
40% 72 274 54
30% 85 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.