Sequence Similarity Clusters for the Entities in PDB 1J5E

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 252 35
95 % 91 253 47
90 % 91 253 52
70 % 91 253 62
50 % 111 348 28
40 % 111 348 38
30 % 124 419 36
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 254 33
95 % 91 254 43
90 % 91 254 48
70 % 91 254 57
50 % 105 342 36
40 % 120 420 22
30 % 120 421 35
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 206 44
95 % 91 261 35
90 % 91 261 39
70 % 105 353 23
50 % 105 354 27
40 % 105 354 37
30 % 105 354 56
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 255 30
95 % 91 255 41
90 % 91 255 46
70 % 91 255 55
50 % 106 347 33
40 % 106 347 45
30 % 119 420 41
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 253 34
95 % 91 253 48
90 % 91 253 53
70 % 91 254 60
50 % 91 254 86
40 % 91 254 106
30 % 91 254 118
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 257 27
95 % 95 262 34
90 % 95 262 38
70 % 95 262 49
50 % 112 355 26
40 % 112 356 36
30 % 112 356 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 249 36
95 % 91 254 45
90 % 91 254 50
70 % 91 254 59
50 % 91 254 85
40 % 91 255 105
30 % 106 345 62
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 87 223
95 % 91 248 50
90 % 91 252 54
70 % 91 252 63
50 % 91 252 88
40 % 91 252 108
30 % 91 252 120
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 51 585
95 % 84 219 62
90 % 84 219 66
70 % 84 219 77
50 % 84 219 107
40 % 84 219 128
30 % 84 219 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 257 26
95 % 92 257 37
90 % 92 257 43
70 % 92 257 52
50 % 106 345 31
40 % 106 345 42
30 % 106 345 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 254 28
95 % 91 255 38
90 % 91 255 44
70 % 91 255 53
50 % 105 341 35
40 % 105 342 46
30 % 105 342 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 51 366
95 % 91 253 46
90 % 91 253 51
70 % 91 253 61
50 % 91 253 87
40 % 91 253 107
30 % 91 253 119
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 244 38
95 % 91 244 54
90 % 91 244 57
70 % 91 244 68
50 % 91 244 92
40 % 91 244 114
30 % 91 244 127
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 218 43
95 % 83 218 63
90 % 83 218 67
70 % 83 218 78
50 % 87 269 77
40 % 87 269 97
30 % 87 269 112
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 247 37
95 % 91 255 39
90 % 91 255 45
70 % 91 255 54
50 % 105 342 34
40 % 105 343 44
30 % 105 343 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 254 32
95 % 91 254 42
90 % 91 254 47
70 % 91 254 56
50 % 106 346 30
40 % 106 346 41
30 % 106 348 57
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 259 24
95 % 99 265 21
90 % 99 265 24
70 % 99 265 32
50 % 99 265 79
40 % 99 265 100
30 % 111 304 78
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 258 25
95 % 92 259 36
90 % 92 259 41
70 % 92 259 50
50 % 104 304 51
40 % 104 305 63
30 % 104 305 86
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 254 29
95 % 92 254 40
90 % 92 258 42
70 % 92 258 51
50 % 108 348 29
40 % 109 350 39
30 % 123 424 34
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 91 192
95 % 91 254 44
90 % 91 254 49
70 % 91 254 58
50 % 105 342 37
40 % 105 342 47
30 % 118 415 43

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.