Sequence Similarity Clusters for the Entities in PDB 1J5E

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 267 37
95 % 92 268 50
90 % 92 268 53
70 % 92 268 64
50 % 119 385 26
40 % 119 385 37
30 % 132 476 29
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 269 35
95 % 92 269 46
90 % 92 269 49
70 % 92 269 58
50 % 113 379 35
40 % 128 470 19
30 % 128 471 32
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 217 47
95 % 92 276 35
90 % 92 276 39
70 % 113 390 21
50 % 113 391 25
40 % 113 391 36
30 % 113 391 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 270 33
95 % 92 270 43
90 % 92 270 47
70 % 92 270 56
50 % 114 384 31
40 % 114 384 43
30 % 127 477 35
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 268 36
95 % 92 268 51
90 % 92 268 54
70 % 92 269 61
50 % 92 269 87
40 % 92 269 107
30 % 92 269 117
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 272 28
95 % 96 277 34
90 % 96 277 38
70 % 96 277 49
50 % 120 392 23
40 % 120 393 35
30 % 120 393 53
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 264 38
95 % 92 269 48
90 % 92 269 51
70 % 92 269 60
50 % 92 269 86
40 % 92 270 106
30 % 114 382 62
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 87 232
95 % 92 263 52
90 % 92 267 55
70 % 92 267 65
50 % 92 267 90
40 % 92 267 109
30 % 92 267 119
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 51 635
95 % 85 234 62
90 % 85 234 66
70 % 85 234 77
50 % 85 234 103
40 % 85 234 129
30 % 85 234 139
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 272 27
95 % 93 272 39
90 % 93 272 44
70 % 93 272 53
50 % 114 382 30
40 % 114 382 41
30 % 114 382 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 269 31
95 % 92 270 40
90 % 92 270 45
70 % 92 270 54
50 % 113 378 34
40 % 113 379 44
30 % 113 379 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 51 436
95 % 92 268 49
90 % 92 268 52
70 % 92 268 63
50 % 92 268 89
40 % 92 268 108
30 % 92 268 118
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 259 41
95 % 92 259 54
90 % 92 259 58
70 % 92 259 68
50 % 92 259 93
40 % 92 259 115
30 % 92 259 128
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 84 233 44
95 % 84 233 63
90 % 84 233 67
70 % 84 233 78
50 % 88 293 78
40 % 88 293 96
30 % 88 293 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 262 39
95 % 92 270 41
90 % 92 270 46
70 % 92 270 55
50 % 113 379 32
40 % 113 380 42
30 % 113 380 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 269 34
95 % 92 269 45
90 % 92 269 48
70 % 92 269 57
50 % 114 383 29
40 % 114 383 40
30 % 114 385 58
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 274 24
95 % 100 280 32
90 % 100 280 37
70 % 100 280 48
50 % 100 280 83
40 % 100 280 102
30 % 119 332 78
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 273 26
95 % 93 274 36
90 % 93 274 40
70 % 93 274 50
50 % 112 332 59
40 % 112 333 72
30 % 112 333 88
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 269 32
95 % 93 269 42
90 % 93 273 41
70 % 93 273 51
50 % 116 385 28
40 % 117 387 38
30 % 131 483 28
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 91 200
95 % 92 269 47
90 % 92 269 50
70 % 92 269 59
50 % 113 379 36
40 % 113 379 45
30 % 126 473 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.