Sequence Similarity Clusters for the Entities in PDB 1J5A

Entity #1 | Chains: A
23S RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
RIBOSOMAL PROTEIN L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 29 1193
95 % 21 29 1606 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 21 29 1642
70 % 21 29 1661
50 % 155 183 127
40 % 201 339 76
30 % 201 339 88
Entity #3 | Chains: L
RIBOSOMAL PROTEIN L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1264
95 % 22 30 1576 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 22 30 1613
70 % 22 30 1625
50 % 22 30 1656
40 % 22 30 1667
30 % 22 30 1635
Entity #4 | Chains: M
RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 34 1008
95 % 22 34 1384 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 22 34 1402
70 % 22 34 1413
50 % 156 196 123
40 % 195 332 88
30 % 195 332 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.