Sequence Similarity Clusters for the Entities in PDB 1J5A

Entity #1 | Chains: A
23S RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
RIBOSOMAL PROTEIN L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 29 1263
95 % 21 29 1684 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 21 29 1725
70 % 21 29 1748
50 % 157 185 139
40 % 204 352 79
30 % 204 352 90
Entity #3 | Chains: L
RIBOSOMAL PROTEIN L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1330
95 % 22 30 1651 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 22 30 1691
70 % 22 30 1708
50 % 22 30 1743
40 % 22 30 1749
30 % 22 30 1709
Entity #4 | Chains: M
RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 34 1071
95 % 22 34 1453 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 22 34 1479
70 % 22 34 1474
50 % 159 202 132
40 % 203 348 84
30 % 203 348 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures