Sequence Similarity Clusters for the Entities in PDB 1J5A

Entity #1 | Chains: A
23S RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
RIBOSOMAL PROTEIN L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 29 1214
95 % 21 29 1631
90 % 21 29 1669
70 % 21 29 1693
50 % 156 184 127
40 % 203 342 76
30 % 203 342 88
Entity #3 | Chains: L
RIBOSOMAL PROTEIN L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 28 1279
95 % 22 30 1602
90 % 22 30 1639
70 % 22 30 1653
50 % 22 30 1689
40 % 22 30 1695
30 % 22 30 1663
Entity #4 | Chains: M
RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 34 1029
95 % 22 34 1409
90 % 22 34 1433
70 % 22 34 1430
50 % 158 198 123
40 % 197 335 87
30 % 197 335 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.