Sequence Similarity Clusters for the Entities in PDB 1J5A

Entity #1 | Chains: A
23S RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
RIBOSOMAL PROTEIN L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 29 1518
95 % 21 29 1789 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 21 29 1830
70 % 21 29 1843
50 % 167 201 128
40 % 214 377 71
30 % 214 377 87
Entity #3 | Chains: L
RIBOSOMAL PROTEIN L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1601
95 % 22 30 1750 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 22 30 1790
70 % 22 30 1799
50 % 22 30 1824
40 % 22 30 1810
30 % 22 30 1760
Entity #4 | Chains: M
RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 34 1262
95 % 22 34 1490 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 22 34 1511
70 % 22 34 1527
50 % 208 366 65
40 % 213 372 74
30 % 213 372 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures