Sequence Similarity Clusters for the Entities in PDB 1J5A

Entity #1 | Chains: A
23S RRNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: K
RIBOSOMAL PROTEIN L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 29 1243
95 % 21 29 1659 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 21 29 1696
70 % 21 29 1721
50 % 156 184 133
40 % 203 348 76
30 % 203 348 88
Entity #3 | Chains: L
RIBOSOMAL PROTEIN L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 28 1310
95 % 22 30 1630 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 22 30 1666
70 % 22 30 1682
50 % 22 30 1715
40 % 22 30 1718
30 % 22 30 1681
Entity #4 | Chains: M
RIBOSOMAL PROTEIN L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 34 1051
95 % 22 34 1432 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 22 34 1456
70 % 22 34 1455
50 % 158 201 126
40 % 202 344 81
30 % 202 344 95

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.