Sequence Similarity Clusters for the Entities in PDB 1J59

Entity #1 | Chains: C,E
5'-D(*GP*CP*GP*AP*AP*AP*AP*GP*TP*GP*TP*GP*AP*C)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,F
5'-D(*AP*TP*AP*TP*GP*TP*CP*AP*CP*AP*CP*TP*TP*TP*TP*CP*G )-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
CATABOLITE GENE ACTIVATOR PROTEIN (CAP) protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 28 649
95 % 22 44 437 Flexibility: Medium
Max RMSD: 11.8, Avg RMSD: 4.5
PDBFlex
90 % 22 44 471
70 % 22 44 518
50 % 22 45 567
40 % 22 45 607
30 % 35 65 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.