Sequence Similarity Clusters for the Entities in PDB 1J40

Entity #1 | Chains: A,C,E,G
Hemoglobin alpha Chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 222 22
95 % 8 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 8 251 21
70 % 8 332 16
50 % 22 754 4
40 % 22 759 8
30 % 110 1226 8
Entity #2 | Chains: B,D,F,H
Hemoglobin beta Chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 169 51
95 % 7 250 19 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 7 255 19
70 % 7 346 14
50 % 23 754 4
40 % 23 759 8
30 % 111 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures