Sequence Similarity Clusters for the Entities in PDB 1J3Y

Entity #1 | Chains: A,C,E,G
Hemoglobin alpha Chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 209 26
95 % 14 240 34 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 15 241 35
70 % 17 322 17
50 % 42 734 5
40 % 42 739 8
30 % 149 1182 8
Entity #2 | Chains: B,D,F,H
Hemoglobin beta Chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 159 53
95 % 13 240 33 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 13 245 32
70 % 16 336 13
50 % 43 734 5
40 % 43 739 8
30 % 150 1182 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.