Sequence Similarity Clusters for the Entities in PDB 1J3E

Entity #1 | Chains: B
5'-D(*AP*AP*GP*GP*(6MA)P*TP*CP*CP*AP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*TP*TP*GP*GP*AP*GP*CP*CP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
SeqA protein protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 27060
95 % 1 2 22442
90 % 1 2 21735
70 % 1 2 19909
50 % 2 3 11317
40 % 2 3 10273
30 % 2 3 8914

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.