Sequence Similarity Clusters for the Entities in PDB 1J3D

Entity #1 | Chains: A
High mobility group protein 2 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82454
95 % 2 2 36192
90 % 2 2 34596
70 % 3 9 8759
50 % 3 9 8369
40 % 6 14 3524
30 % 7 15 3351

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures