Sequence Similarity Clusters for the Entities in PDB 1J3D

Entity #1 | Chains: A
High mobility group protein 2 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72907
95 % 2 2 36593
90 % 2 2 34928
70 % 3 9 7910
50 % 3 9 7288
40 % 6 14 3145
30 % 33 47 1080

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures