Sequence Similarity Clusters for the Entities in PDB 1J35

Entity #1 | Chains: A
coagulation factor IX-binding protein A chain protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 13292
95 % 3 5 12648 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 3 5 12437
70 % 3 9 5721
50 % 8 27 1422
40 % 16 58 699
30 % 80 218 100
Entity #2 | Chains: B
Coagulation factor IX-binding protein B chain protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7204
95 % 3 6 7743 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 6 7696
70 % 3 9 5739
50 % 5 21 2000
40 % 17 58 699
30 % 81 218 100
Entity #3 | Chains: C
Coagulation factor IX protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47721
95 % 2 2 35689 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 5 14414
70 % 2 5 13510
50 % 2 5 12018
40 % 2 5 10889
30 % 2 5 9453

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.