Sequence Similarity Clusters for the Entities in PDB 1J34

Entity #1 | Chains: A
coagulation factor IX-binding protein A chain protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 13272
95 % 1 5 12633 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 5 12423
70 % 1 9 5712
50 % 1 27 1422
40 % 1 58 698
30 % 21 218 100
Entity #2 | Chains: B
coagulation factor IX-binding protein B chain protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7193
95 % 1 6 7734 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 6 7687
70 % 1 9 5730
50 % 1 21 1994
40 % 2 58 698
30 % 22 218 100
Entity #3 | Chains: C
Coagulation factor IX protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 47660
95 % 1 2 35637 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 5 14393
70 % 1 5 13489
50 % 1 5 12000
40 % 1 5 10874
30 % 1 5 9438

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.