Sequence Similarity Clusters for the Entities in PDB 1J34

Entity #1 | Chains: A
coagulation factor IX-binding protein A chain protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 13920
95 % 1 5 13227 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 5 13011
70 % 1 9 5978
50 % 1 28 1285
40 % 1 60 635
30 % 21 220 101
Entity #2 | Chains: B
coagulation factor IX-binding protein B chain protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7540
95 % 1 6 8096 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 6 8039
70 % 1 9 5997
50 % 1 25 1519
40 % 2 60 635
30 % 22 220 101
Entity #3 | Chains: C
Coagulation factor IX protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 49669
95 % 1 2 37112 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 5 15079
70 % 1 5 14143
50 % 1 5 12550
40 % 1 5 11364
30 % 1 5 9877

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures