Sequence Similarity Clusters for the Entities in PDB 1J34

Entity #1 | Chains: A
coagulation factor IX-binding protein A chain protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 12772
95 % 1 5 12201 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 5 12019
70 % 1 9 5716
50 % 1 29 1297
40 % 3 65 534
30 % 22 294 49
Entity #2 | Chains: B
coagulation factor IX-binding protein B chain protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8004
95 % 1 6 8069 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 6 7999
70 % 1 9 5790
50 % 1 25 1572
40 % 4 65 534
30 % 23 294 49
Entity #3 | Chains: C
Coagulation factor IX protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42688
95 % 1 2 35814 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 5 15261
70 % 1 6 12601
50 % 1 6 11205
40 % 1 6 10065
30 % 1 6 8586

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures