Sequence Similarity Clusters for the Entities in PDB 1J2X

Entity #1 | Chains: A
Transcription initiation factor IIF, alpha subunit protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28911
95 % 2 3 23959 Flexibility: Medium
Max RMSD: 3.4, Avg RMSD: 3.4
PDBFlex
90 % 2 3 23197
70 % 2 3 21213
50 % 2 3 18407
40 % 2 3 16399
30 % 2 3 14051
Entity #2 | Chains: B
RNA polymerase II CTD phosphatase protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.