Sequence Similarity Clusters for the Entities in PDB 1J2X

Entity #1 | Chains: A
Transcription initiation factor IIF, alpha subunit protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30295
95 % 2 3 25097 Flexibility: Medium
Max RMSD: 3.4, Avg RMSD: 3.4
PDBFlex
90 % 2 3 24271
70 % 2 3 22065
50 % 2 3 19097
40 % 2 3 17002
30 % 2 3 14572
Entity #2 | Chains: B
RNA polymerase II CTD phosphatase protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures