Sequence Similarity Clusters for the Entities in PDB 1J2Q

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome alpha subunit protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10862
95 % 2 2 4963 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 2 4989
70 % 2 2 4883
50 % 8 19 250
40 % 1004 1165 3
30 % 1751 2025 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome beta subunit protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10983
95 % 1 1 10953 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 10807
70 % 1 1 10247
50 % 7 16 296
40 % 7 16 319
30 % 514 562 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures