Sequence Similarity Clusters for the Entities in PDB 1J2Q

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome alpha subunit protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 9631
95 % 2 2 4365
90 % 2 2 4387
70 % 2 2 4304
50 % 8 16 293
40 % 992 1097 3
30 % 1730 1908 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome beta subunit protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 9734
95 % 1 1 9736
90 % 1 1 9623
70 % 1 1 9136
50 % 7 13 354
40 % 7 13 384
30 % 508 542 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.