Sequence Similarity Clusters for the Entities in PDB 1J2Q

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome alpha subunit protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10579
95 % 2 2 4832 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 2 4857
70 % 2 2 4761
50 % 8 19 243
40 % 1004 1149 3
30 % 1751 1997 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome beta subunit protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10696
95 % 1 1 10683 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 10537
70 % 1 1 10006
50 % 7 16 287
40 % 7 16 306
30 % 514 560 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures