Sequence Similarity Clusters for the Entities in PDB 1J2Q

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome alpha subunit protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10326
95 % 2 2 4708 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 2 4732
70 % 2 2 4647
50 % 8 18 264
40 % 1004 1144 3
30 % 1751 1989 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome beta subunit protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10440
95 % 1 1 10461 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 10328
70 % 1 1 9815
50 % 7 15 308
40 % 7 15 322
30 % 514 557 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.