Sequence Similarity Clusters for the Entities in PDB 1J2P

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome alpha subunit protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10838
95 % 1 2 4963 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 2 4989
70 % 1 2 4883
50 % 6 19 250
40 % 958 1165 3
30 % 1672 2025 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures