Sequence Similarity Clusters for the Entities in PDB 1J2J

Entity #1 | Chains: A
ADP-ribosylation factor 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6508
95 % 3 13 2320 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 2.9
PDBFlex
90 % 3 13 2385
70 % 3 46 417
50 % 3 58 403
40 % 5 80 296
30 % 119 775 16
Entity #2 | Chains: B
ADP-ribosylation factor binding protein GGA1 protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73046
95 % 1 1 50849
90 % 1 1 48274
70 % 1 1 42334
50 % 1 1 36116
40 % 1 1 31801
30 % 1 1 26897

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.