Sequence Similarity Clusters for the Entities in PDB 1J2B

Entity #1 | Chains: C,D
tRNA(Val) rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Archaeosine tRNA-guanine transglycosylase protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7425
95 % 4 4 7918 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 4 4 7877
70 % 4 4 7590
50 % 4 4 7001
40 % 4 4 6512
30 % 4 4 5811

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.