Sequence Similarity Clusters for the Entities in PDB 1J2B

Entity #1 | Chains: C,D
tRNA(Val) rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Archaeosine tRNA-guanine transglycosylase protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 8027
95 % 4 4 8539 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 8482
70 % 4 4 8175
50 % 4 4 7522
40 % 4 4 6990
30 % 4 4 6235

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures