Sequence Similarity Clusters for the Entities in PDB 1J2B

Entity #1 | Chains: C,D
tRNA(Val) rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Archaeosine tRNA-guanine transglycosylase protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7688
95 % 4 4 8222 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 8173
70 % 4 4 7888
50 % 4 4 7259
40 % 4 4 6747
30 % 4 4 6019

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.