Sequence Similarity Clusters for the Entities in PDB 1J2B

Entity #1 | Chains: C,D
tRNA(Val) rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Archaeosine tRNA-guanine transglycosylase protein, length: 582 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 7825
95 % 4 4 8334 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 4 4 8284
70 % 4 4 7993
50 % 4 4 7360
40 % 4 4 6843
30 % 4 4 6102

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures