Sequence Similarity Clusters for the Entities in PDB 1J1X

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68413
95 % 5 22 2268 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 22 2331
70 % 33 191 72
50 % 55 305 21
40 % 174 916 5
30 % 195 1042 7
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 11 4069
95 % 5 22 2266
90 % 5 22 2329
70 % 5 39 1091
50 % 113 566 7
40 % 175 916 5
30 % 196 1042 7
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 362 655 3
95 % 401 708 4
90 % 408 725 5
70 % 571 942 7
50 % 572 950 8
40 % 578 984 11
30 % 578 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.