Sequence Similarity Clusters for the Entities in PDB 1J1U

Entity #1 | Chains: B
tRNA(Tyr) rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Tyrosyl-tRNA synthetase protein, length: 306 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27112
95 % 7 28 1238 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 7 28 1267
70 % 7 28 1296
50 % 8 29 1284
40 % 8 31 1209
30 % 12 40 994

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures