Sequence Similarity Clusters for the Entities in PDB 1J1Q

Entity #1 | Chains: A
Antiviral protein S protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 22041
95 % 2 5 15875 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 5 15532
70 % 8 18 2511
50 % 8 18 2483
40 % 9 19 2353
30 % 61 212 232

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1J1Q 1 A Antiviral protein S 3527 3.2.2.22 | Details
2 1GIK 1 A ANTIVIRAL PROTEIN S 3527 3.2.2.22 | Details
3 1J1R 1 A Antiviral Protein S 3527 3.2.2.22 | Details
4 1J1S 1 A Antiviral Protein S 3527 3.2.2.22 | Details