Sequence Similarity Clusters for the Entities in PDB 1J1Q

Entity #1 | Chains: A
Antiviral protein S protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 22474
95 % 2 5 16183 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 5 15832
70 % 8 18 2542
50 % 8 18 2522
40 % 9 19 2390
30 % 61 212 236

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures