Sequence Similarity Clusters for the Entities in PDB 1J1P

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70287
95 % 8 22 2356 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 22 2421
70 % 38 192 74
50 % 60 309 23
40 % 193 948 5
30 % 216 1077 7
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 4230
95 % 8 22 2354 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 8 22 2419
70 % 8 39 1123
50 % 126 594 7
40 % 194 948 5
30 % 217 1077 7
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 374 666 3
95 % 413 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 420 736 5
70 % 589 956 7
50 % 590 964 8
40 % 596 998 11
30 % 596 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures