Sequence Similarity Clusters for the Entities in PDB 1J1O

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67985
95 % 7 22 2252
90 % 7 22 2316
70 % 35 188 72
50 % 57 303 21
40 % 175 897 5
30 % 196 1023 7
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 4024
95 % 7 22 2250
90 % 7 22 2314
70 % 7 39 1083
50 % 111 549 8
40 % 176 897 5
30 % 197 1023 7
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 359 650 3
95 % 398 703 4
90 % 405 720 5
70 % 568 937 7
50 % 569 945 7
40 % 575 979 11
30 % 575 979 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.