Sequence Similarity Clusters for the Entities in PDB 1J1O

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60667
95 % 7 21 1978
90 % 7 21 2024
70 % 35 166 72
50 % 54 264 23
40 % 149 734 5
30 % 169 846 8
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 3725
95 % 7 21 1977
90 % 7 21 2023
70 % 7 35 1104
50 % 91 428 9
40 % 150 734 5
30 % 170 846 8
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 299 571 3
95 % 338 624 4
90 % 345 641 5
70 % 507 856 6
50 % 508 865 6
40 % 514 899 10
30 % 514 899 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.