Sequence Similarity Clusters for the Entities in PDB 1J1O

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66060
95 % 7 22 2171
90 % 7 22 2238
70 % 35 183 74
50 % 55 294 22
40 % 166 858 5
30 % 187 984 7
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 3873
95 % 7 22 2169
90 % 7 22 2236
70 % 7 39 1048
50 % 104 519 8
40 % 167 858 5
30 % 188 984 7
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 348 633 3
95 % 387 686 4
90 % 394 703 5
70 % 556 919 6
50 % 557 927 6
40 % 563 961 11
30 % 563 961 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.