Sequence Similarity Clusters for the Entities in PDB 1J1O

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61678
95 % 7 21 2013
90 % 7 21 2064
70 % 35 168 74
50 % 54 272 22
40 % 153 769 5
30 % 173 882 8
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 10 3805
95 % 7 21 2012
90 % 7 21 2063
70 % 7 35 1123
50 % 92 452 8
40 % 154 769 5
30 % 174 882 8
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 307 580 3
95 % 346 633 4
90 % 353 650 5
70 % 515 865 6
50 % 516 874 6
40 % 522 908 10
30 % 522 908 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.