Sequence Similarity Clusters for the Entities in PDB 1J1O

Entity #1 | Chains: L
lysozyme binding Ig kappa chain V23-J2 region protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64095
95 % 7 22 2099
90 % 7 22 2163
70 % 35 181 69
50 % 55 291 21
40 % 162 831 5
30 % 183 957 8
Entity #2 | Chains: H
Ig VH,anti-lysozyme protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 11 3748
95 % 7 22 2096
90 % 7 22 2160
70 % 7 39 1008
50 % 100 495 8
40 % 163 831 5
30 % 184 957 8
Entity #3 | Chains: Y
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 337 618 3
95 % 376 671 4
90 % 383 688 5
70 % 545 904 6
50 % 546 912 6
40 % 552 946 10
30 % 552 946 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.