Sequence Similarity Clusters for the Entities in PDB 1J1N

Entity #1 | Chains: A,B
AlgQ2 protein, length: 492 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10292
95 % 2 7 6752 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 2 7 6731
70 % 5 14 3496
50 % 5 14 3399
40 % 5 19 1784
30 % 5 19 1741

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5H71 1 A, B AlgQ2 UNP residues 25-516 28214
2 1J1N 1 A, B AlgQ2 residues 1-492 90322
3 1KWH 1 A Macromolecule-Binding Periplasmic Protein residues 1-492 90322
4 5H6U 1 A, B AlgQ2 UNP residues 28-514 28214
5 4TQU 4 Q AlgQ2 28214
6 4XIG 4 Q AlgQ2 90322
7 4XTC 4 Q AlgQ2 90322