Sequence Similarity Clusters for the Entities in PDB 1J1N

Entity #1 | Chains: A,B
AlgQ2 protein, length: 492 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10119
95 % 2 7 6651 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 2 7 6629
70 % 5 14 3429
50 % 5 14 3338
40 % 5 18 2020
30 % 5 18 1948

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3A09 1 A AlgQ1 residues in database 25-514 90322
2 3VLV 1 A AlgQ1 UNP residues 25-526 90322
3 5H71 1 A, B AlgQ2 UNP residues 25-516 28214
4 3VLU 1 A AlgQ1 UNP residues 25-526 90322
5 1J1N 1 A, B AlgQ2 residues 1-492 90322
6 1Y3N 1 A AlgQ1 residues 1-490 90322
7 1Y3Q 1 A AlgQ1 residues 1-490 90322
8 1KWH 1 A Macromolecule-Binding Periplasmic Protein residues 1-492 90322
9 3VLW 1 A, B AlgQ1 UNP residues 25-526 90322
10 1Y3P 1 A AlgQ1 residues 1-490 90322
11 5H6U 1 A, B AlgQ2 UNP residues 28-514 28214
12 4TQU 4 Q AlgQ2 28214
13 4XIG 4 Q AlgQ2 90322
14 4XTC 4 Q AlgQ2 90322