Sequence Similarity Clusters for the Entities in PDB 1J1E

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 12975
95 % 4 10 5757 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 4 10 5755
70 % 14 26 1619
50 % 143 213 112
40 % 197 336 33
30 % 218 363 47
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 15432
95 % 3 3 14479
90 % 3 3 14203
70 % 3 3 13299
50 % 3 5 8864
40 % 3 5 8119
30 % 3 5 7147
Entity #3 | Chains: C,F
Troponin I protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41342
95 % 1 1 31327 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 1 1 29991
70 % 1 1 26873
50 % 1 2 17481
40 % 1 2 15585
30 % 1 2 13325

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.