Sequence Similarity Clusters for the Entities in PDB 1J1E

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 6360
95 % 4 10 5822 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.4
PDBFlex
90 % 4 10 5838
70 % 14 26 1765
50 % 155 238 105
40 % 209 361 40
30 % 264 432 42
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15355
95 % 3 3 14317 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.7
PDBFlex
90 % 3 3 14051
70 % 3 3 13145
50 % 3 5 8910
40 % 3 5 8075
30 % 3 5 6992
Entity #3 | Chains: C,F
Troponin I protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32637
95 % 1 1 28172 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 3.0
PDBFlex
90 % 1 1 27086
70 % 1 1 24449
50 % 1 2 17375
40 % 1 2 15367
30 % 1 2 12865

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures