Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13950
95 % 3 10 6181 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.4
PDBFlex
90 % 3 10 6186
70 % 13 26 1752
50 % 144 235 105
40 % 185 358 41
30 % 202 385 50
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16598
95 % 2 3 15488 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.7
PDBFlex
90 % 2 3 15198
70 % 2 3 14222
50 % 2 5 9480
40 % 2 5 8666
30 % 2 5 7624
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46678
95 % 1 1 35001
90 % 1 1 33417
70 % 1 1 29757
50 % 1 4 6083
40 % 1 4 5693
30 % 1 4 5110

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures