Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 6185
95 % 3 10 5666 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.4
PDBFlex
90 % 3 10 5672
70 % 13 26 1712
50 % 136 221 116
40 % 177 344 41
30 % 222 415 43
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14885
95 % 2 3 13908 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.7
PDBFlex
90 % 2 3 13662
70 % 2 3 12813
50 % 2 5 8692
40 % 2 5 7879
30 % 2 5 6820
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34652
95 % 1 1 29622
90 % 1 1 28454
70 % 1 1 25601
50 % 1 4 5901
40 % 1 4 5490
30 % 1 4 4849

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures