Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13288
95 % 3 10 5908 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.4
PDBFlex
90 % 3 10 5906
70 % 13 26 1660
50 % 133 216 115
40 % 174 339 39
30 % 191 366 49
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15801
95 % 2 3 14830 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 3.7
PDBFlex
90 % 2 3 14553
70 % 2 3 13641
50 % 2 5 9088
40 % 2 5 8316
30 % 2 5 7328
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44768
95 % 1 1 33644
90 % 1 1 32165
70 % 1 1 28709
50 % 1 4 5831
40 % 1 4 5460
30 % 1 4 4902

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.