Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13078
95 % 3 10 5808 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 3 10 5804
70 % 13 26 1635
50 % 132 213 112
40 % 173 336 34
30 % 190 363 47
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15540
95 % 2 3 14580 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.8
PDBFlex
90 % 2 3 14301
70 % 2 3 13392
50 % 2 5 8929
40 % 2 5 8178
30 % 2 5 7202
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44114
95 % 1 1 33147 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 1 31704
70 % 1 1 28358
50 % 1 4 5738
40 % 1 4 5368
30 % 1 4 4825

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.