Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 6447
95 % 3 10 5889 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 3 10 5908
70 % 13 26 1802
50 % 144 238 106
40 % 185 468 41
30 % 230 432 42
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15563
95 % 2 3 14496 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 3.2
PDBFlex
90 % 2 3 14226
70 % 2 3 13301
50 % 2 5 9003
40 % 2 5 8163
30 % 2 5 7061
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36015
95 % 1 1 30719 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 1 29459
70 % 1 1 26456
50 % 1 4 6122
40 % 1 4 5696
30 % 1 4 5011

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures