Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 6844
95 % 3 10 6253 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 3 10 6246
70 % 13 26 1923
50 % 150 249 112
40 % 191 372 54
30 % 239 451 45
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16496
95 % 2 3 15357 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 3.2
PDBFlex
90 % 2 3 15049
70 % 2 3 14012
50 % 2 5 9485
40 % 2 5 8576
30 % 2 5 7408
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37967
95 % 1 1 32332 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 1 30951
70 % 1 1 27672
50 % 1 4 6401
40 % 1 4 5941
30 % 1 4 5206

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures