Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 6676
95 % 3 10 6112 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 3 10 6110
70 % 13 26 1868
50 % 150 249 108
40 % 191 372 47
30 % 238 449 43
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16119
95 % 2 3 15000 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 3.2
PDBFlex
90 % 2 3 14706
70 % 2 3 13723
50 % 2 5 9308
40 % 2 5 8415
30 % 2 5 7278
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37160
95 % 1 1 31694 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 1 30355
70 % 1 1 27171
50 % 1 4 6292
40 % 1 4 5844
30 % 1 4 5132

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures