Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13404
95 % 3 10 5966 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.4
PDBFlex
90 % 3 10 5965
70 % 13 26 1676
50 % 133 217 114
40 % 174 340 39
30 % 191 367 51
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15928
95 % 2 3 14939 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.7
PDBFlex
90 % 2 3 14661
70 % 2 3 13724
50 % 2 5 9142
40 % 2 5 8363
30 % 2 5 7369
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45067
95 % 1 1 33858
90 % 1 1 32367
70 % 1 1 28870
50 % 1 4 5879
40 % 1 4 5504
30 % 1 4 4940

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.