Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13606
95 % 3 10 6048 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.4
PDBFlex
90 % 3 10 6049
70 % 13 26 1703
50 % 136 221 113
40 % 177 344 38
30 % 194 371 53
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16195
95 % 2 3 15153 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.7
PDBFlex
90 % 2 3 14878
70 % 2 3 13938
50 % 2 5 9272
40 % 2 5 8478
30 % 2 5 7468
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45742
95 % 1 1 34347
90 % 1 1 32814
70 % 1 1 29238
50 % 1 4 5962
40 % 1 4 5582
30 % 1 4 5007

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures