Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12975
95 % 3 10 5757 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 3 10 5755
70 % 13 26 1619
50 % 132 213 112
40 % 173 336 33
30 % 190 363 47
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15432
95 % 2 3 14479 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 4.8
PDBFlex
90 % 2 3 14203
70 % 2 3 13299
50 % 2 5 8864
40 % 2 5 8119
30 % 2 5 7147
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43820
95 % 1 1 32939 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 1 31508
70 % 1 1 28184
50 % 1 4 5698
40 % 1 4 5329
30 % 1 4 4791

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.