Sequence Similarity Clusters for the Entities in PDB 1J1D

Entity #1 | Chains: A,D
Troponin C protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 6561
95 % 3 10 6002 Flexibility: Medium
Max RMSD: 16.6, Avg RMSD: 6.8
PDBFlex
90 % 3 10 6009
70 % 13 26 1840
50 % 146 242 108
40 % 187 365 48
30 % 234 438 43
Entity #2 | Chains: B,E
Troponin T protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15852
95 % 2 3 14754 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 3.2
PDBFlex
90 % 2 3 14467
70 % 2 3 13525
50 % 2 5 9186
40 % 2 5 8320
30 % 2 5 7204
Entity #3 | Chains: C,F
Troponin I protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36619
95 % 1 1 31216 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.7
PDBFlex
90 % 1 1 29907
70 % 1 1 26791
50 % 1 4 6214
40 % 1 4 5781
30 % 1 4 5078

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures