Sequence Similarity Clusters for the Entities in PDB 1J19

Entity #1 | Chains: A
radixin protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 2372
95 % 3 11 3037 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.9
PDBFlex
90 % 3 11 3079
70 % 7 16 2113
50 % 10 25 1128
40 % 10 25 1144
30 % 13 29 1008
Entity #2 | Chains: B
16-mer peptide from Intercellular adhesion molecule-2 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures