Sequence Similarity Clusters for the Entities in PDB 1J19

Entity #1 | Chains: A
radixin protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 2273
95 % 3 11 2924 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.9
PDBFlex
90 % 3 11 2970
70 % 7 16 2019
50 % 10 25 1094
40 % 10 25 1108
30 % 13 29 970
Entity #2 | Chains: B
16-mer peptide from Intercellular adhesion molecule-2 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.