Sequence Similarity Clusters for the Entities in PDB 1J19

Entity #1 | Chains: A
radixin protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 11 2777
95 % 3 11 3103 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 3 11 3157
70 % 7 16 2170
50 % 10 25 1171
40 % 10 25 1174
30 % 13 29 1026
Entity #2 | Chains: B
16-mer peptide from Intercellular adhesion molecule-2 protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures