Sequence Similarity Clusters for the Entities in PDB 1J16

Entity #1 | Chains: A
Trypsin II, anionic protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27655
95 % 6 36 1341 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 6 36 1367
70 % 204 532 19
50 % 214 683 14
40 % 413 1698 4
30 % 430 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures