Sequence Similarity Clusters for the Entities in PDB 1J05

Entity #1 | Chains: A,L
anti-CEA mAb T84.66, light chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45244
95 % 1 1 37736 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 35993
70 % 6 215 66
50 % 14 319 21
40 % 16 363 27
30 % 184 7269 1
Entity #2 | Chains: B,H
anti-CEA mAb T84.66, heavy chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45243
95 % 1 1 37735 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 35992
70 % 5 87 266
50 % 38 613 6
40 % 140 5834 1
30 % 185 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures