Sequence Similarity Clusters for the Entities in PDB 1J05

Entity #1 | Chains: A,L
anti-CEA mAb T84.66, light chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47970
95 % 1 1 35860 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 34224
70 % 5 193 75
50 % 14 312 23
40 % 51 956 5
30 % 60 1085 7
Entity #2 | Chains: B,H
anti-CEA mAb T84.66, heavy chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47435
95 % 1 1 35442 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 33833
70 % 5 86 268
50 % 36 599 6
40 % 52 956 5
30 % 61 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures