Sequence Similarity Clusters for the Entities in PDB 1J05

Entity #1 | Chains: A,L
anti-CEA mAb T84.66, light chain protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44896
95 % 1 1 33636 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 32179
70 % 5 183 75
50 % 14 297 22
40 % 47 874 5
30 % 55 1000 7
Entity #2 | Chains: B,H
anti-CEA mAb T84.66, heavy chain protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44383
95 % 1 1 33243 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 31810
70 % 5 82 251
50 % 32 532 8
40 % 48 874 5
30 % 56 1000 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.