Sequence Similarity Clusters for the Entities in PDB 1IZL

Entity #1 | Chains: A,J
Photosystem II: Subunit PsbA protein, length: 360 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11915
95 % 36 37 648 Flexibility: Low
Max RMSD: 7.6, Avg RMSD: 1.1
PDBFlex
90 % 36 37 673
70 % 37 42 584
50 % 37 42 625
40 % 37 42 657
30 % 37 42 648
Entity #10 | Chains: K,W
Photosystem II: Subunit PsbK protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 868
95 % 23 23 1172 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 25 25 1092
70 % 26 27 1009
50 % 26 27 1056
40 % 26 27 1066
30 % 26 27 1046
Entity #11 | Chains: O,Y
Photosystem II: Subunit PsbO protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: U,Z
Photosystem II: Subunit PsbU protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: 0,V
Photosystem II: Subunit PsbV protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 26 758
95 % 26 26 1047 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 26 26 1070
70 % 26 26 1107
50 % 27 27 1114
40 % 28 28 1103
30 % 28 28 1085
Entity #14 | Chains: 1,X
Photosystem II: Subunit PsbX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,L
Photosystem II: Subunit PsbB protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32474
95 % 1 1 26370
90 % 1 1 25474
70 % 1 1 23121
50 % 1 1 19973
40 % 1 1 17777
30 % 37 43 632
Entity #3 | Chains: C,M
Photosystem II: Subunit PsbC protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32450
95 % 1 1 26363
90 % 1 1 25467
70 % 1 1 23115
50 % 37 42 622
40 % 37 42 655
30 % 38 43 632
Entity #4 | Chains: D,N
Photosystem II: Subunit PsbD protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 36 483
95 % 36 37 649 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.7
PDBFlex
90 % 37 42 550
70 % 37 42 585
50 % 37 42 626
40 % 37 42 658
30 % 37 42 650
Entity #5 | Chains: E,P
Photosystem II: Subunit PsbE protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 37 468
95 % 36 37 654 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.9
PDBFlex
90 % 36 37 680
70 % 36 37 720
50 % 37 42 631
40 % 37 42 662
30 % 37 42 657
Entity #6 | Chains: F,Q
Photosystem II: Subunit PsbF protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 31 606
95 % 30 31 826 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 30 31 860
70 % 30 31 893
50 % 31 32 887
40 % 31 32 912
30 % 31 32 898
Entity #7 | Chains: G,R
Photosystem II: Subunit PsbG protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H,S
Photosystem II: Subunit PsbH protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: I,T
Photosystem II: Subunit PsbI protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures