Sequence Similarity Clusters for the Entities in PDB 1IZL

Entity #1 | Chains: A,J
Photosystem II: Subunit PsbA protein, length: 360 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11388
95 % 34 35 641 Flexibility: Low
Max RMSD: 7.6, Avg RMSD: 1.1
PDBFlex
90 % 34 35 667
70 % 35 38 627
50 % 35 38 671
40 % 35 38 706
30 % 35 38 702
Entity #10 | Chains: K,W
Photosystem II: Subunit PsbK protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 22 863
95 % 22 22 1171 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 24 24 1096
70 % 25 26 1008
50 % 25 26 1046
40 % 25 26 1057
30 % 25 26 1036
Entity #11 | Chains: O,Y
Photosystem II: Subunit PsbO protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: U,Z
Photosystem II: Subunit PsbU protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: 0,V
Photosystem II: Subunit PsbV protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 25 25 764
95 % 25 25 1053 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 25 25 1069
70 % 25 25 1104
50 % 26 26 1098
40 % 27 27 1088
30 % 27 27 1070
Entity #14 | Chains: 1,X
Photosystem II: Subunit PsbX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,L
Photosystem II: Subunit PsbB protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31050
95 % 1 1 25218
90 % 1 1 24396
70 % 1 1 22273
50 % 1 1 19288
40 % 1 1 17164
30 % 35 39 680
Entity #3 | Chains: C,M
Photosystem II: Subunit PsbC protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31026
95 % 1 1 25211
90 % 1 1 24389
70 % 1 1 22267
50 % 35 38 667
40 % 35 38 701
30 % 36 39 680
Entity #4 | Chains: D,N
Photosystem II: Subunit PsbD protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 34 488
95 % 34 35 642 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.9
PDBFlex
90 % 35 38 581
70 % 35 38 628
50 % 35 38 672
40 % 35 38 707
30 % 35 38 703
Entity #5 | Chains: E,P
Photosystem II: Subunit PsbE protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 35 468
95 % 34 35 653 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.9
PDBFlex
90 % 34 35 679
70 % 34 35 730
50 % 35 38 679
40 % 35 38 713
30 % 35 38 707
Entity #6 | Chains: F,Q
Photosystem II: Subunit PsbF protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 29 637
95 % 28 29 855 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 28 29 889
70 % 28 29 921
50 % 29 30 906
40 % 29 30 932
30 % 29 30 910
Entity #7 | Chains: G,R
Photosystem II: Subunit PsbG protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H,S
Photosystem II: Subunit PsbH protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: I,T
Photosystem II: Subunit PsbI protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.