Sequence Similarity Clusters for the Entities in PDB 1IZL

Entity #1 | Chains: A,J
Photosystem II: Subunit PsbA protein, length: 360 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11747
95 % 36 37 635 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 0.8
PDBFlex
90 % 36 37 661
70 % 37 42 571
50 % 37 42 617
40 % 37 42 648
30 % 37 42 642
Entity #10 | Chains: K,W
Photosystem II: Subunit PsbK protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 845
95 % 23 23 1154 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 25 25 1075
70 % 26 27 993
50 % 26 27 1037
40 % 26 27 1048
30 % 26 27 1023
Entity #11 | Chains: O,Y
Photosystem II: Subunit PsbO protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: U,Z
Photosystem II: Subunit PsbU protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: 0,V
Photosystem II: Subunit PsbV protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 26 745
95 % 26 26 1030 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 26 26 1054
70 % 26 26 1090
50 % 27 27 1097
40 % 28 28 1087
30 % 28 28 1065
Entity #14 | Chains: 1,X
Photosystem II: Subunit PsbX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,L
Photosystem II: Subunit PsbB protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32075
95 % 1 1 26050
90 % 1 1 25177
70 % 1 1 22882
50 % 1 1 19776
40 % 1 1 17601
30 % 37 43 626
Entity #3 | Chains: C,M
Photosystem II: Subunit PsbC protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32051
95 % 1 1 26043
90 % 1 1 25170
70 % 1 1 22876
50 % 37 42 614
40 % 37 42 646
30 % 38 43 626
Entity #4 | Chains: D,N
Photosystem II: Subunit PsbD protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 36 475
95 % 36 37 636 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.8
PDBFlex
90 % 37 42 530
70 % 37 42 572
50 % 37 42 618
40 % 37 42 649
30 % 37 42 644
Entity #5 | Chains: E,P
Photosystem II: Subunit PsbE protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 37 459
95 % 36 37 639 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.9
PDBFlex
90 % 36 37 665
70 % 36 37 710
50 % 37 42 622
40 % 37 42 653
30 % 37 42 650
Entity #6 | Chains: F,Q
Photosystem II: Subunit PsbF protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 31 595
95 % 30 31 810 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 0.8
PDBFlex
90 % 30 31 845
70 % 30 31 880
50 % 31 32 875
40 % 31 32 900
30 % 31 32 884
Entity #7 | Chains: G,R
Photosystem II: Subunit PsbG protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H,S
Photosystem II: Subunit PsbH protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: I,T
Photosystem II: Subunit PsbI protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.