Sequence Similarity Clusters for the Entities in PDB 1IZL

Entity #1 | Chains: A,J
Photosystem II: Subunit PsbA protein, length: 360 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 9077
95 % 36 37 663 Flexibility: Low
Max RMSD: 7.6, Avg RMSD: 1.1
PDBFlex
90 % 36 37 687
70 % 37 42 604
50 % 37 42 646
40 % 37 42 683
30 % 37 42 685
Entity #10 | Chains: K,W
Photosystem II: Subunit PsbK protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 23 989
95 % 23 23 1196 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 25 25 1116
70 % 26 27 1026
50 % 26 27 1074
40 % 26 27 1088
30 % 26 27 1081
Entity #11 | Chains: O,Y
Photosystem II: Subunit PsbO protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #12 | Chains: U,Z
Photosystem II: Subunit PsbU protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #13 | Chains: 0,V
Photosystem II: Subunit PsbV protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 26 883
95 % 26 26 1081 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 26 26 1106
70 % 26 26 1143
50 % 27 27 1159
40 % 28 28 1140
30 % 28 28 1132
Entity #14 | Chains: 1,X
Photosystem II: Subunit PsbX protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,L
Photosystem II: Subunit PsbB protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33540
95 % 1 1 28844
90 % 1 1 27705
70 % 37 42 607
50 % 37 42 648
40 % 73 84 327
30 % 73 84 335
Entity #3 | Chains: C,M
Photosystem II: Subunit PsbC protein, length: 473 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33539
95 % 1 1 28843
90 % 1 1 27704
70 % 37 42 606
50 % 37 42 651
40 % 74 84 327
30 % 74 84 335
Entity #4 | Chains: D,N
Photosystem II: Subunit PsbD protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 36 554
95 % 36 37 665 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 0.7
PDBFlex
90 % 37 42 567
70 % 37 42 608
50 % 37 42 652
40 % 37 42 684
30 % 37 42 688
Entity #5 | Chains: E,P
Photosystem II: Subunit PsbE protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 37 532
95 % 36 37 668 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 0.9
PDBFlex
90 % 36 37 694
70 % 36 37 737
50 % 37 42 657
40 % 37 42 693
30 % 37 42 697
Entity #6 | Chains: F,Q
Photosystem II: Subunit PsbF protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 31 694
95 % 30 31 851 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.9
PDBFlex
90 % 30 31 883
70 % 31 32 851
50 % 31 32 906
40 % 31 32 929
30 % 31 32 921
Entity #7 | Chains: G,R
Photosystem II: Subunit PsbG protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: H,S
Photosystem II: Subunit PsbH protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: I,T
Photosystem II: Subunit PsbI protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures