Sequence Similarity Clusters for the Entities in PDB 1IYJ

Entity #1 | Chains: A,C
Deleted in split hand/split foot protein 1 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 2128
95 % 3 22 2435 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 2.7
PDBFlex
90 % 3 22 2510
70 % 3 22 2503
50 % 3 22 2483
40 % 3 22 2439
30 % 3 22 2285
Entity #2 | Chains: B,D
breast cancer susceptibility protein, length: 817 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41004
95 % 1 1 34532 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 24592
70 % 2 3 14981
50 % 2 3 13192
40 % 2 3 11828
30 % 2 3 10019

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures