Sequence Similarity Clusters for the Entities in PDB 1IXX

Entity #1 | Chains: A,C,E
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30065
95 % 1 1 24911 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 24070
70 % 8 9 6100
50 % 15 28 1310
40 % 32 60 644
30 % 131 220 107
Entity #2 | Chains: B,D,F
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7710
95 % 5 6 8274 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 6 8213
70 % 8 9 6121
50 % 14 25 1555
40 % 33 60 644
30 % 132 220 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures