Sequence Similarity Clusters for the Entities in PDB 1IXX

Entity #1 | Chains: A,C,E
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29710
95 % 1 1 24619 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 23794
70 % 8 9 6021
50 % 15 28 1297
40 % 32 60 638
30 % 131 220 104
Entity #2 | Chains: B,D,F
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7597
95 % 5 6 8153 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 6 8094
70 % 8 9 6040
50 % 14 25 1535
40 % 33 60 638
30 % 132 220 104

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures