Sequence Similarity Clusters for the Entities in PDB 1IXX

Entity #1 | Chains: A,C,E
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30183
95 % 1 1 26305 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 25379
70 % 8 9 5720
50 % 16 29 1297
40 % 36 65 535
30 % 198 296 47
Entity #2 | Chains: B,D,F
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8018
95 % 5 6 8081 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 5 6 8012
70 % 8 9 5794
50 % 14 25 1572
40 % 37 65 535
30 % 199 296 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures