Sequence Similarity Clusters for the Entities in PDB 1IXX

Entity #1 | Chains: A,C,E
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29042
95 % 1 1 24096 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 23312
70 % 8 9 5898
50 % 15 28 1267
40 % 32 60 625
30 % 131 220 100
Entity #2 | Chains: B,D,F
COAGULATION FACTORS IX/X-BINDING PROTEIN protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7408
95 % 5 6 7984 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 6 7928
70 % 8 9 5916
50 % 14 25 1500
40 % 33 60 625
30 % 132 220 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.