Sequence Similarity Clusters for the Entities in PDB 1IXR

Entity #1 | Chains: A,B
Holliday junction DNA helicase ruvA protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43520
95 % 1 1 32940 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 31468
70 % 1 1 28061
50 % 1 1 23910
40 % 1 1 21036
30 % 9 10 2108
Entity #2 | Chains: C
RuvB protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57558
95 % 3 3 17563 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 2.1
PDBFlex
90 % 3 3 17213
70 % 3 3 16006
50 % 11 11 4926
40 % 11 11 4654
30 % 11 11 4270

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures