Sequence Similarity Clusters for the Entities in PDB 1IXR

Entity #1 | Chains: A,B
Holliday junction DNA helicase ruvA protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42996
95 % 1 1 32561 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 31120
70 % 1 1 27764
50 % 1 1 23669
40 % 1 1 20827
30 % 9 10 2086
Entity #2 | Chains: C
RuvB protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56899
95 % 3 3 17329 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 2.1
PDBFlex
90 % 3 3 16988
70 % 3 3 15809
50 % 11 11 4865
40 % 11 11 4603
30 % 11 11 4218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures