Sequence Similarity Clusters for the Entities in PDB 1IXR

Entity #1 | Chains: A,B
Holliday junction DNA helicase ruvA protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46205
95 % 1 1 38446 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 36661
70 % 1 1 32497
50 % 1 1 27606
40 % 1 1 24213
30 % 9 10 2065
Entity #2 | Chains: C
RuvB protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67023
95 % 3 3 22104 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 2.1
PDBFlex
90 % 3 3 21424
70 % 3 3 19613
50 % 11 11 5195
40 % 11 11 4875
30 % 11 11 4361

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures