Sequence Similarity Clusters for the Entities in PDB 1IXR

Entity #1 | Chains: A,B
Holliday junction DNA helicase ruvA protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47263
95 % 1 1 39309 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 37469
70 % 1 1 33171
50 % 1 1 28190
40 % 1 1 24726
30 % 9 10 2123
Entity #2 | Chains: C
RuvB protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68418
95 % 3 3 22735 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 2.1
PDBFlex
90 % 3 3 22006
70 % 3 3 20051
50 % 11 11 5319
40 % 11 11 4989
30 % 11 11 4458

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures