Sequence Similarity Clusters for the Entities in PDB 1IWP

Entity #1 | Chains: A,L
Glycerol Dehydratase Alpha subunit protein, length: 555 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17116
95 % 1 2 15789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 2 15499
70 % 7 10 3076
50 % 7 10 3022
40 % 7 10 2974
30 % 7 10 2791
Entity #2 | Chains: B,E
Glycerol Dehydratase Beta subunit protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42567
95 % 1 2 19094 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 18602
70 % 1 2 17196
50 % 1 2 14928
40 % 1 2 13290
30 % 1 2 11382
Entity #3 | Chains: G,M
Glycerol Dehydratase Gamma subunit protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23277
95 % 1 2 19991 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19447
70 % 1 2 17939
50 % 1 2 15570
40 % 1 2 13858
30 % 1 2 11862

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures