Sequence Similarity Clusters for the Entities in PDB 1IWA

Entity #1 | Chains: A,C,E,G,I,K,M,O
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 4571
95 % 5 5 4319 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 5 5 4348
70 % 5 7 2191
50 % 34 48 175
40 % 40 57 148
30 % 60 87 116
Entity #2 | Chains: B,D,F,H,J,L,N,P
ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9534
95 % 2 2 6034 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 5 4500
70 % 5 5 4426
50 % 5 6 3261
40 % 5 6 3169
30 % 5 6 2980

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.