Sequence Similarity Clusters for the Entities in PDB 1IWA

Entity #1 | Chains: A,C,E,G,I,K,M,O
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 4785
95 % 5 5 4486 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 5 5 4525
70 % 7 9 1306
50 % 37 52 123
40 % 43 61 120
30 % 63 91 97
Entity #2 | Chains: B,D,F,H,J,L,N,P
ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9951
95 % 2 2 6253 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 5 4688
70 % 5 5 4600
50 % 7 8 1727
40 % 7 8 1742
30 % 7 8 1704

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures