Sequence Similarity Clusters for the Entities in PDB 1IW7

Entity #1 | Chains: A,B,K,L
RNA polymerase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 172
95 % 7 38 237
90 % 7 38 248
70 % 7 50 186
50 % 7 50 227
40 % 7 70 179
30 % 8 71 191
Entity #2 | Chains: C,M
RNA polymerase beta subunit protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 378
95 % 7 38 558
90 % 7 50 417
70 % 7 50 463
50 % 7 50 526
40 % 7 50 565
30 % 7 50 568
Entity #3 | Chains: D,N
RNA polymerase beta subunit protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 377
95 % 7 38 557
90 % 7 47 424
70 % 7 47 472
50 % 7 47 535
40 % 7 47 573
30 % 7 47 580
Entity #4 | Chains: E,O
RNA polymerase omega subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 2008
95 % 7 38 570
90 % 7 49 431
70 % 7 49 480
50 % 7 49 543
40 % 7 49 582
30 % 7 49 590
Entity #5 | Chains: F,P
RNA polymerase sigma-70 subunit protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 2058
95 % 6 29 952
90 % 6 29 975
70 % 6 30 996
50 % 6 30 1040
40 % 6 30 1058
30 % 6 30 1046

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.