Sequence Similarity Clusters for the Entities in PDB 1IW7

Entity #1 | Chains: A,B,K,L
RNA polymerase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 171
95 % 7 38 237
90 % 7 38 248
70 % 7 50 185
50 % 7 50 225
40 % 7 70 177
30 % 8 71 191
Entity #2 | Chains: C,M
RNA polymerase beta subunit protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 376
95 % 7 38 556
90 % 7 50 415
70 % 7 50 460
50 % 7 50 525
40 % 7 50 562
30 % 7 50 564
Entity #3 | Chains: D,N
RNA polymerase beta subunit protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 375
95 % 7 38 555
90 % 7 47 422
70 % 7 47 469
50 % 7 47 534
40 % 7 47 571
30 % 7 47 577
Entity #4 | Chains: E,O
RNA polymerase omega subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 1984
95 % 7 38 569
90 % 7 49 429
70 % 7 49 476
50 % 7 49 542
40 % 7 49 581
30 % 7 49 587
Entity #5 | Chains: F,P
RNA polymerase sigma-70 subunit protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 2034
95 % 6 29 949
90 % 6 29 972
70 % 6 30 990
50 % 6 30 1032
40 % 6 30 1052
30 % 6 30 1040

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.