Sequence Similarity Clusters for the Entities in PDB 1IW7

Entity #1 | Chains: A,B,K,L
RNA polymerase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 44 181
95 % 8 44 242
90 % 8 44 256
70 % 9 57 200
50 % 9 57 241
40 % 9 92 153
30 % 10 93 167
Entity #2 | Chains: C,M
RNA polymerase beta subunit protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 44 456
95 % 8 44 628
90 % 9 57 449
70 % 9 57 486
50 % 9 71 487
40 % 9 71 521
30 % 9 71 521
Entity #3 | Chains: D,N
RNA polymerase beta subunit protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 44 455
95 % 8 44 627
90 % 9 54 457
70 % 9 54 496
50 % 9 54 559
40 % 9 54 600
30 % 9 54 589
Entity #4 | Chains: E,O
RNA polymerase omega subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 13 2065
95 % 8 44 637
90 % 9 56 469
70 % 9 56 507
50 % 9 56 569
40 % 9 56 606
30 % 9 56 597
Entity #5 | Chains: F,P
RNA polymerase sigma-70 subunit protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 13 1818
95 % 7 35 925
90 % 7 35 956
70 % 7 36 972
50 % 7 36 1013
40 % 7 50 834
30 % 7 50 821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.