Sequence Similarity Clusters for the Entities in PDB 1IW7

Entity #1 | Chains: A,B,K,L
RNA polymerase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 35 193
95 % 7 35 269
90 % 7 35 281
70 % 7 47 196
50 % 7 47 241
40 % 7 67 184
30 % 8 68 199
Entity #2 | Chains: C,M
RNA polymerase beta subunit protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 35 443
95 % 7 35 650
90 % 7 47 448
70 % 7 47 501
50 % 7 47 580
40 % 7 47 612
30 % 7 47 620
Entity #3 | Chains: D,N
RNA polymerase beta subunit protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 35 442
95 % 7 35 649
90 % 7 44 454
70 % 7 44 511
50 % 7 44 588
40 % 7 44 623
30 % 7 44 631
Entity #4 | Chains: E,O
RNA polymerase omega subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 1965
95 % 7 35 679
90 % 7 46 460
70 % 7 46 516
50 % 7 46 598
40 % 7 46 636
30 % 7 46 639
Entity #5 | Chains: F,P
RNA polymerase sigma-70 subunit protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 2012
95 % 6 26 1107
90 % 6 26 1126
70 % 6 27 1130
50 % 6 27 1174
40 % 6 27 1194
30 % 6 27 1169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.