Sequence Similarity Clusters for the Entities in PDB 1IW7

Entity #1 | Chains: A,B,K,L
RNA polymerase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 175
95 % 7 38 239
90 % 7 38 249
70 % 7 50 187
50 % 7 50 229
40 % 7 70 183
30 % 8 71 193
Entity #2 | Chains: C,M
RNA polymerase beta subunit protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 386
95 % 7 38 573
90 % 7 50 420
70 % 7 50 467
50 % 7 50 533
40 % 7 50 573
30 % 7 50 577
Entity #3 | Chains: D,N
RNA polymerase beta subunit protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 38 385
95 % 7 38 572
90 % 7 47 427
70 % 7 47 476
50 % 7 47 542
40 % 7 47 579
30 % 7 47 587
Entity #4 | Chains: E,O
RNA polymerase omega subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 2027
95 % 7 38 590
90 % 7 49 437
70 % 7 49 485
50 % 7 49 552
40 % 7 49 590
30 % 7 49 598
Entity #5 | Chains: F,P
RNA polymerase sigma-70 subunit protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 2078
95 % 6 29 965
90 % 6 29 989
70 % 6 30 1001
50 % 6 30 1050
40 % 6 30 1068
30 % 6 30 1055

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.