Sequence Similarity Clusters for the Entities in PDB 1IW7

Entity #1 | Chains: A,B,K,L
RNA polymerase alpha subunit protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 34 199
95 % 7 34 278
90 % 7 34 290
70 % 7 46 201
50 % 7 46 248
40 % 7 66 187
30 % 8 67 199
Entity #2 | Chains: C,M
RNA polymerase beta subunit protein, length: 1119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 34 444
95 % 7 34 642
90 % 7 46 451
70 % 7 46 498
50 % 7 46 573
40 % 7 46 612
30 % 7 46 615
Entity #3 | Chains: D,N
RNA polymerase beta subunit protein, length: 1524 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 34 443
95 % 7 34 641
90 % 7 43 461
70 % 7 43 507
50 % 7 43 583
40 % 7 43 628
30 % 7 43 624
Entity #4 | Chains: E,O
RNA polymerase omega subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 11 1922
95 % 7 34 655
90 % 7 45 471
70 % 7 45 514
50 % 7 45 592
40 % 7 45 640
30 % 7 45 636
Entity #5 | Chains: F,P
RNA polymerase sigma-70 subunit protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 10 1967
95 % 6 25 1158
90 % 6 25 1172
70 % 6 26 1161
50 % 6 26 1222
40 % 6 26 1247
30 % 6 26 1219

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.