Sequence Similarity Clusters for the Entities in PDB 1IVS

Entity #1 | Chains: C,D
tRNA (Val) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Valyl-tRNA synthetase protein, length: 862 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14240
95 % 2 3 13362 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 3.7
PDBFlex
90 % 2 3 13136
70 % 2 3 11048
50 % 2 3 9904
40 % 2 3 8956
30 % 2 3 7713

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures