Sequence Similarity Clusters for the Entities in PDB 1IVS

Entity #1 | Chains: C,D
tRNA (Val) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Valyl-tRNA synthetase protein, length: 862 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10876
95 % 2 3 10869 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 4.1
PDBFlex
90 % 2 3 10732
70 % 2 3 10196
50 % 2 3 9226
40 % 2 3 8453
30 % 2 3 7447

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.