Sequence Similarity Clusters for the Entities in PDB 1IVS

Entity #1 | Chains: C,D
tRNA (Val) rna, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Valyl-tRNA synthetase protein, length: 862 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 10741
95 % 2 3 10720 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 3.5
PDBFlex
90 % 2 3 10579
70 % 2 3 10022
50 % 2 3 9077
40 % 2 3 8320
30 % 2 3 7325

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.