Sequence Similarity Clusters for the Entities in PDB 1IVO

Entity #1 | Chains: A,B
Epidermal Growth Factor Receptor protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 31921
95 % 10 12 5273 Flexibility: High
Max RMSD: 25.7, Avg RMSD: 10.9
PDBFlex
90 % 10 12 5302
70 % 10 12 5470
50 % 10 12 5286
40 % 31 37 1279
30 % 31 37 1296
Entity #2 | Chains: C,D
Epidermal growth factor protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11393
95 % 3 6 9294 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.1
PDBFlex
90 % 3 6 9242
70 % 3 5 11744
50 % 3 13 5029
40 % 3 13 4909
30 % 3 13 4681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures