Sequence Similarity Clusters for the Entities in PDB 1IVO

Entity #1 | Chains: A,B
Epidermal Growth Factor Receptor protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 7984
95 % 9 11 5186 Flexibility: High
Max RMSD: 25.7, Avg RMSD: 12.6
PDBFlex
90 % 9 11 5205
70 % 9 11 5082
50 % 9 11 4848
40 % 33 39 983
30 % 33 39 963
Entity #2 | Chains: C,D
Epidermal growth factor protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 10365
95 % 3 6 8402 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.7
PDBFlex
90 % 3 6 8345
70 % 3 6 8052
50 % 5 22 2348
40 % 5 22 2327
30 % 5 22 2218

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures