Sequence Similarity Clusters for the Entities in PDB 1IVO

Entity #1 | Chains: A,B
Epidermal Growth Factor Receptor protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 9793
95 % 8 10 5143 Flexibility: High
Max RMSD: 25.7, Avg RMSD: 11.7
PDBFlex
90 % 8 10 5160
70 % 8 10 5104
50 % 8 10 4873
40 % 30 35 1061
30 % 30 35 1038
Entity #2 | Chains: C,D
Epidermal growth factor protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9712
95 % 3 6 7906 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.9
PDBFlex
90 % 3 6 7864
70 % 3 6 7573
50 % 5 22 2199
40 % 5 22 2186
30 % 5 22 2091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.