Sequence Similarity Clusters for the Entities in PDB 1IVO

Entity #1 | Chains: A,B
Epidermal Growth Factor Receptor protein, length: 622 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 7134
95 % 10 12 5190 Flexibility: High
Max RMSD: 25.7, Avg RMSD: 10.9
PDBFlex
90 % 10 12 5212
70 % 10 12 5498
50 % 10 12 5202
40 % 38 45 981
30 % 40 47 916
Entity #2 | Chains: C,D
Epidermal growth factor protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 11260
95 % 3 6 9082 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.1
PDBFlex
90 % 3 6 8981
70 % 3 6 8646
50 % 5 22 2534
40 % 5 22 2490
30 % 5 22 2318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures