Sequence Similarity Clusters for the Entities in PDB 1IU3

Entity #1 | Chains: A,D
5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
SeqA protein protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30294
95 % 2 2 25102 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 24258
70 % 2 2 22034
50 % 3 3 12559
40 % 3 3 11378
30 % 3 3 9877

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures