Sequence Similarity Clusters for the Entities in PDB 1IU3

Entity #1 | Chains: A,D
5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
SeqA protein protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 29285
95 % 2 2 24298 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 23511
70 % 2 2 21397
50 % 3 3 12165
40 % 3 3 11037
30 % 3 3 9580

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.