Sequence Similarity Clusters for the Entities in PDB 1IU3

Entity #1 | Chains: A,D
5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,E
5'-D(*TP*TP*GP*GP*AP*TP*CP*CP*TP*T)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
SeqA protein protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27905
95 % 2 2 24447 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 2 23631
70 % 2 2 21507
50 % 3 3 12317
40 % 3 3 11052
30 % 3 3 9399

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures