Sequence Similarity Clusters for the Entities in PDB 1ITB

Entity #1 | Chains: A
INTERLEUKIN-1 BETA protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 23 2478
95 % 21 27 2138 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 23 29 2005
70 % 27 33 1672
50 % 27 33 1717
40 % 27 33 1704
30 % 41 50 1065
Entity #2 | Chains: B
TYPE 1 INTERLEUKIN-1 RECEPTOR protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12353
95 % 2 5 11855 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 2 5 11691
70 % 2 5 11050
50 % 2 5 10315
40 % 2 5 9323
30 % 2 5 8004

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures