Sequence Similarity Clusters for the Entities in PDB 1ITB

Entity #1 | Chains: A
INTERLEUKIN-1 BETA protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 16 3065
95 % 21 27 2110 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 23 29 1958
70 % 27 33 1617
50 % 27 33 1658
40 % 27 33 1675
30 % 41 50 1028
Entity #2 | Chains: B
TYPE 1 INTERLEUKIN-1 RECEPTOR protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 12180
95 % 2 5 11874 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.1
PDBFlex
90 % 2 5 11704
70 % 2 5 11066
50 % 2 5 9938
40 % 2 5 9047
30 % 2 5 7927

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures