Sequence Similarity Clusters for the Entities in PDB 1ITB

Entity #1 | Chains: A
INTERLEUKIN-1 BETA protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 16 3000
95 % 21 27 2075 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 23 29 1929
70 % 27 33 1591
50 % 27 33 1626
40 % 27 33 1649
30 % 41 50 1001
Entity #2 | Chains: B
TYPE 1 INTERLEUKIN-1 RECEPTOR protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 11990
95 % 2 5 11712 Flexibility: Medium
Max RMSD: 19.5, Avg RMSD: 7.4
PDBFlex
90 % 2 5 11555
70 % 2 5 10935
50 % 2 5 9819
40 % 2 5 8940
30 % 2 5 7828

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.