Sequence Similarity Clusters for the Entities in PDB 1ITB

Entity #1 | Chains: A
INTERLEUKIN-1 BETA protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 16 2960
95 % 21 27 2051 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 23 29 1908
70 % 27 33 1572
50 % 27 33 1606
40 % 27 33 1630
30 % 41 50 1000
Entity #2 | Chains: B
TYPE 1 INTERLEUKIN-1 RECEPTOR protein, length: 315 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 11825
95 % 2 5 11542 Flexibility: Medium
Max RMSD: 19.5, Avg RMSD: 7.4
PDBFlex
90 % 2 5 11384
70 % 2 5 10744
50 % 2 5 9661
40 % 2 5 8796
30 % 2 5 7702

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.