Sequence Similarity Clusters for the Entities in PDB 1IS8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
GTP Cyclohydrolase I protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1446
95 % 1 3 1944 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 3 1990
70 % 1 3 2012
50 % 1 3 2025
40 % 1 3 2021
30 % 1 3 1942
Entity #2 | Chains: K,L,M,N,O,P,Q,R,S,T
GTP Cyclohydrolase I Feedback Regulatory Protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1207
95 % 2 4 1616 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 4 1649
70 % 2 4 1667
50 % 2 4 1702
40 % 2 4 1720
30 % 2 4 1683

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures