Sequence Similarity Clusters for the Entities in PDB 1IS8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
GTP Cyclohydrolase I protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1372
95 % 1 3 1854 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 3 1896
70 % 1 3 1913
50 % 1 12 1929
40 % 1 3 1928
30 % 1 3 1860
Entity #2 | Chains: K,L,M,N,O,P,Q,R,S,T
GTP Cyclohydrolase I Feedback Regulatory Protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1136
95 % 2 4 1544 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 4 1569
70 % 2 4 1586
50 % 2 4 1619
40 % 2 4 1639
30 % 2 4 1608

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.