Sequence Similarity Clusters for the Entities in PDB 1IS8

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
GTP Cyclohydrolase I protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 1419
95 % 1 3 1902 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 3 1945
70 % 1 3 1964
50 % 1 3 1985
40 % 1 3 1979
30 % 1 3 1904
Entity #2 | Chains: K,L,M,N,O,P,Q,R,S,T
GTP Cyclohydrolase I Feedback Regulatory Protein protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1182
95 % 2 4 1585 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 4 1614
70 % 2 4 1628
50 % 2 4 1667
40 % 2 4 1682
30 % 2 4 1643

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures