Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 33 679
95 % 14 33 833 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 33 861
70 % 14 33 900
50 % 249 285 64
40 % 249 286 80
30 % 1744 2025 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 33 674
95 % 14 33 827 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 33 854
70 % 14 33 891
50 % 249 285 61
40 % 249 286 78
30 % 249 286 96
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 31 768
95 % 14 33 826 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 33 853
70 % 14 33 890
50 % 14 33 944
40 % 248 285 83
30 % 248 285 100
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1584
95 % 14 17 1411 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 17 1432
70 % 243 254 31
50 % 243 255 78
40 % 243 255 100
30 % 512 562 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1553
95 % 14 19 1254 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1274
70 % 14 19 1295
50 % 14 19 1347
40 % 249 285 82
30 % 249 286 95
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32568
95 % 14 19 1266 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1288
70 % 14 19 1312
50 % 14 19 1362
40 % 249 271 95
30 % 249 271 106
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 33 676
95 % 14 33 825 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 33 852
70 % 14 33 889
50 % 249 286 60
40 % 1000 1165 3
30 % 1745 2025 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 870
95 % 14 33 830 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 33 858
70 % 14 33 896
50 % 249 286 58
40 % 1001 1165 3
30 % 1746 2025 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 28 766
95 % 14 34 828 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 34 856
70 % 14 34 893
50 % 249 286 62
40 % 1002 1165 3
30 % 1747 2025 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 29 741
95 % 14 33 816 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 33 841
70 % 14 33 898
50 % 249 287 57
40 % 1003 1165 3
30 % 1748 2025 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 915
95 % 14 34 832 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 34 860
70 % 14 34 899
50 % 249 286 63
40 % 249 286 84
30 % 1749 2025 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 30 648
95 % 14 34 619 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 34 646
70 % 14 34 697
50 % 249 286 50
40 % 249 286 69
30 % 1750 2025 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 1740
95 % 14 16 1496 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 16 1519
70 % 14 16 1536
50 % 249 271 72
40 % 249 271 94
30 % 513 562 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 16 1253
95 % 14 16 1482 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 16 1503
70 % 14 16 1517
50 % 249 286 59
40 % 249 286 79
30 % 249 286 97

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
2 5LEY 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
3 5LF7 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
4 5LF1 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
5 5LF4 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
6 5LF6 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
7 5LF3 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
8 5LEX 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
9 5LEZ 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
10 5LF0 8 H, V Proteasome subunit beta type-7 9606 3.4.25.1 | Details
11 4R3O 9 I, W Proteasome subunit beta type-7 UNP RESIDUES 44-263 9606 3.4.25.1 | Details
12 4R67 9 I, W, k, y Proteasome subunit beta type-7 UNP RESIDUES 44-263 9606 3.4.25.1 | Details
13 3UNB 8 H, V, j, x Proteasome subunit beta type-7 10090 3.4.25.1 | Details
14 1IRU 9 I, W 20S proteasome 9913
15 3UNE 8 H, V, j, x Proteasome subunit beta type-7 10090 3.4.25.1 | Details
16 5A0Q 9 I, W PROTEASOME SUBUNIT BETA TYPE-7 SUBUNIT PARTIALLY BOUND TO THE INHIBITOR ADAMANTANE-ACETYL-(6-AMINOHEXANOYL)3-(LEUCINYL)3-VINYL-(METHYL)-SULFONE (ADAAHX3L3VS) 9606 3.4.25.1 | Details