Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 517
95 % 14 40 646 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 40 673
70 % 14 40 725
50 % 253 302 59
40 % 253 303 74
30 % 1772 2144 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 511
95 % 14 40 636 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 663
70 % 14 40 714
50 % 253 302 56
40 % 253 303 72
30 % 253 303 90
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 31 795
95 % 14 40 641 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 669
70 % 14 40 721
50 % 14 40 776
40 % 252 302 77
30 % 252 302 92
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1036
95 % 14 24 1020 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1043
70 % 247 271 28
50 % 247 272 75
40 % 247 272 97
30 % 520 596 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1028
95 % 14 26 950 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 978
70 % 14 26 1011
50 % 14 26 1059
40 % 253 302 75
30 % 253 303 89
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33514
95 % 14 26 955 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 981
70 % 14 26 1012
50 % 14 26 1062
40 % 253 288 86
30 % 253 288 98
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 518
95 % 14 40 647 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 40 674
70 % 14 40 726
50 % 253 303 55
40 % 1016 1233 3
30 % 1773 2144 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 897
95 % 14 40 645 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 40 672
70 % 14 40 724
50 % 253 303 53
40 % 1017 1233 3
30 % 1774 2144 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 581
95 % 14 41 642 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 41 670
70 % 14 41 722
50 % 253 303 58
40 % 1018 1233 3
30 % 1775 2144 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 553
95 % 14 40 637 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 40 664
70 % 14 40 715
50 % 253 304 49
40 % 1019 1233 3
30 % 1776 2144 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 946
95 % 14 41 638 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 41 665
70 % 14 41 716
50 % 253 303 57
40 % 253 303 76
30 % 1777 2144 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 37 498
95 % 14 41 526 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 41 556
70 % 14 41 586
50 % 253 303 40
40 % 253 303 56
30 % 1778 2144 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1077
95 % 14 23 1051 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1084
70 % 14 23 1125
50 % 253 288 68
40 % 253 288 85
30 % 521 596 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 858
95 % 14 23 1052 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1085
70 % 14 23 1126
50 % 253 303 54
40 % 253 303 73
30 % 253 303 91

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
2 5LEY 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
3 5LF7 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
4 5LF1 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
5 5LF4 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
6 5LF6 15 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
7 5LF3 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
8 5LEX 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
9 5LEZ 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
10 5LF0 14 N, b Proteasome subunit beta type-6 9606 3.4.25.1 | Details
11 4R3O 8 H, V Proteasome subunit beta type-6 UNP RESIDUES 35-236 9606 3.4.25.1 | Details
12 4R67 8 H, V, j, x Proteasome subunit beta type-6 UNP RESIDUES 35-236 9606 3.4.25.1 | Details
13 3UNB 14 4, N, b, p Proteasome subunit beta type-6 10090 3.4.25.1 | Details
14 1IRU 8 H, V 20S proteasome 9913
15 3UNE 14 4, N, b, p Proteasome subunit beta type-6 10090 3.4.25.1 | Details
16 5VFP 8 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
17 5VFQ 8 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
18 5VFR 19 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
19 5VFS 8 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
20 5VFT 25 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
21 5VFU 25 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
22 5VFO 8 N, n Proteasome subunit beta type-6 9606 3.4.25.1 | Details
23 5A0Q 8 H, V PROTEASOME SUBUNIT BETA TYPE-6 SUBUNIT PARTIALLY BOUND TO THE INHIBITOR ADAMANTANE-ACETYL-(6-AMINOHEXANOYL)3-(LEUCINYL)3-VINYL-(METHYL)-SULFONE (ADAAHX3L3VS) 9606 3.4.25.1 | Details