Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 517
95 % 14 40 646 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 40 673
70 % 14 40 726
50 % 253 306 54
40 % 253 307 69
30 % 1772 2172 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 511
95 % 14 40 636 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 663
70 % 14 40 715
50 % 253 303 59
40 % 253 304 72
30 % 253 304 88
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 31 797
95 % 14 40 641 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 669
70 % 14 40 722
50 % 14 40 779
40 % 252 303 77
30 % 252 303 92
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1040
95 % 14 24 1027 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1051
70 % 247 271 28
50 % 247 272 75
40 % 247 272 97
30 % 520 597 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1033
95 % 14 26 954 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 982
70 % 14 26 1011
50 % 14 26 1060
40 % 253 303 76
30 % 253 304 87
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33588
95 % 14 26 958 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 984
70 % 14 26 1012
50 % 14 26 1063
40 % 253 289 86
30 % 253 289 98
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 518
95 % 14 40 647 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 40 674
70 % 14 40 727
50 % 253 307 51
40 % 1016 1249 3
30 % 1773 2172 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 913
95 % 14 40 645 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 40 672
70 % 14 40 725
50 % 253 307 50
40 % 1017 1249 3
30 % 1774 2172 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 583
95 % 14 41 642 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 41 670
70 % 14 41 723
50 % 253 307 55
40 % 1018 1249 3
30 % 1775 2172 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 554
95 % 14 40 637 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 40 664
70 % 14 40 716
50 % 253 308 46
40 % 1019 1249 3
30 % 1776 2172 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 954
95 % 14 41 638 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 41 665
70 % 14 41 717
50 % 253 307 52
40 % 253 307 70
30 % 1777 2172 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 37 498
95 % 14 41 526 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 41 556
70 % 14 41 590
50 % 253 307 40
40 % 253 307 56
30 % 1778 2172 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1080
95 % 14 23 1068 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1103
70 % 14 23 1133
50 % 253 289 67
40 % 253 289 85
30 % 521 597 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 871
95 % 14 23 1069 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1104
70 % 14 23 1134
50 % 253 304 57
40 % 253 304 73
30 % 253 304 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
2 5LEY 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
3 5LF7 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
4 5LF1 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
5 5LF4 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
6 5LF6 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
7 5LF3 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
8 5LEX 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
9 5LEZ 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
10 5LF0 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
11 4R3O 5 E, S Proteasome subunit alpha type-5 UNP RESIDUES 8-241 9606 3.4.25.1 | Details
12 4R67 5 E, S, g, u Proteasome subunit alpha type-5 UNP RESIDUES 8-241 9606 3.4.25.1 | Details
13 3UNB 4 D, R, f, t Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
14 1IRU 5 E, S 20S proteasome 9913
15 3UNF 4 D, R Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
16 3UNE 4 D, R, f, t Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
17 3UNH 4 D, R Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
18 6EPC 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
19 6EPD 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
20 6EPE 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
21 6EPF 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
22 6AVO 5 H, M Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
23 5VFP 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
24 5VFQ 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
25 5VFR 16 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
26 5VFS 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
27 5VFT 22 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
28 5VFU 22 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
29 5VFO 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
30 5M32 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
31 5T0G 5 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
32 5T0H 11 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
33 5T0I 11 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
34 5T0J 6 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
35 5T0C 23 AK, BK Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
36 5LN3 13 E Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
37 5GJQ 10 F, l Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
38 5GJR 23 F, l Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
39 5L4G 5 E, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
40 5A0Q 5 E, S PROTEASOME SUBUNIT ALPHA TYPE-5 9606 3.4.25.1 | Details