Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 48 440
95 % 14 48 560 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 48 587
70 % 14 48 628
50 % 291 357 40
40 % 291 358 47
30 % 2038 2530 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 442
95 % 14 47 563 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 591
70 % 14 47 631
50 % 291 353 43
40 % 291 354 50
30 % 291 354 68
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 38 623
95 % 14 47 557 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 47 584
70 % 14 47 625
50 % 14 47 678
40 % 290 353 52
30 % 290 353 70
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1091
95 % 14 24 1089 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1116
70 % 285 309 23
50 % 285 310 63
40 % 285 310 83
30 % 596 685 9
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1085
95 % 14 26 1010 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1038
70 % 14 26 1067
50 % 14 26 1108
40 % 291 353 51
30 % 291 354 65
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34782
95 % 14 26 1014 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 1041
70 % 14 26 1064
50 % 14 26 1110
40 % 291 332 61
30 % 291 332 75
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 47 441
95 % 14 47 562 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 47 589
70 % 14 47 630
50 % 291 357 38
40 % 1168 1456 2
30 % 2039 2530 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 957
95 % 14 47 561 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 47 588
70 % 14 47 629
50 % 291 357 37
40 % 1169 1456 2
30 % 2040 2530 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 42 479
95 % 14 48 559 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 48 586
70 % 14 48 627
50 % 291 357 41
40 % 1170 1456 2
30 % 2041 2530 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 43 464
95 % 14 47 552 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 47 579
70 % 14 47 620
50 % 291 358 35
40 % 1171 1456 2
30 % 2042 2530 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 998
95 % 14 48 553 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 48 580
70 % 14 48 621
50 % 291 357 39
40 % 291 357 48
30 % 2043 2530 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 22 1212
95 % 14 48 456 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 48 492
70 % 14 48 524
50 % 291 357 31
40 % 291 357 41
30 % 2044 2530 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1140
95 % 14 23 1124 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1161
70 % 14 23 1191
50 % 291 332 47
40 % 291 332 60
30 % 597 685 9
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 24 926
95 % 24 33 738 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 24 33 772
70 % 24 33 816
50 % 291 354 42
40 % 291 354 49
30 % 291 354 67

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
2 5LEY 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
3 5LF7 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
4 5LF1 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
5 5LF4 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
6 5LF6 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
7 5LF3 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
8 5LEX 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
9 5LEZ 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
10 5LF0 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
11 4R3O 5 E, S Proteasome subunit alpha type-5 UNP RESIDUES 8-241 9606 3.4.25.1 | Details
12 4R67 5 E, S, g, u Proteasome subunit alpha type-5 UNP RESIDUES 8-241 9606 3.4.25.1 | Details
13 3UNB 4 D, R, f, t Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
14 1IRU 5 E, S 20S proteasome 9913
15 3UNF 4 D, R Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
16 3UNE 4 D, R, f, t Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
17 3UNH 4 D, R Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
18 6MSB 24 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
19 6MSD 24 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
20 6MSE 25 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
21 6MSG 25 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
22 6MSH 24 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
23 6MSJ 24 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
24 6MSK 24 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
25 6EPC 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
26 6EPD 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
27 6EPE 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
28 6EPF 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
29 6AVO 5 H, M Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
30 5VFP 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
31 5VFQ 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
32 5VFR 16 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
33 5VFS 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
34 5VFT 22 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
35 5VFU 22 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
36 5VFO 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
37 5M32 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
38 5T0G 5 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
39 5T0H 11 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
40 5T0I 11 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
41 5T0J 6 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
42 5T0C 23 AK, BK Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
43 5LN3 13 E Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
44 5GJQ 10 F, l Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
45 5GJR 23 F, l Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
46 5L4G 5 E, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
47 5A0Q 5 E, S PROTEASOME SUBUNIT ALPHA TYPE-5 9606 3.4.25.1 | Details