Sequence Similarity Clusters for the Entities in PDB 1IRU

Entity #1 | Chains: A,O
20S proteasome protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 514
95 % 14 40 645 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 14 40 671
70 % 14 40 725
50 % 253 302 53
40 % 253 303 63
30 % 1772 2144 3
Entity #10 | Chains: J,X
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 508
95 % 14 40 635 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 662
70 % 14 40 714
50 % 253 302 47
40 % 253 303 61
30 % 253 303 78
Entity #11 | Chains: K,Y
20S proteasome protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 31 788
95 % 14 40 640 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 40 667
70 % 14 40 721
50 % 14 40 776
40 % 252 302 70
30 % 252 302 84
Entity #12 | Chains: L,Z
20S proteasome protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1027
95 % 14 24 1016 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 14 24 1040
70 % 247 271 27
50 % 247 272 75
40 % 247 272 95
30 % 520 596 10
Entity #13 | Chains: 1,M
20S proteasome protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 22 1020
95 % 14 26 945 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 974
70 % 14 26 1011
50 % 14 26 1056
40 % 253 302 66
30 % 253 303 77
Entity #14 | Chains: 2,N
20S proteasome protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33299
95 % 14 26 950 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 26 977
70 % 14 26 1012
50 % 14 26 1060
40 % 253 288 85
30 % 253 288 97
Entity #2 | Chains: B,P
20S proteasome protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 40 515
95 % 14 40 646 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 14 40 672
70 % 14 40 726
50 % 253 303 45
40 % 1016 1233 3
30 % 1773 2144 3
Entity #3 | Chains: C,Q
20S proteasome protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 26 891
95 % 14 40 644 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 14 40 670
70 % 14 40 724
50 % 253 303 42
40 % 1017 1233 3
30 % 1774 2144 3
Entity #4 | Chains: D,R
20S proteasome protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 35 577
95 % 14 41 641 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 14 41 668
70 % 14 41 722
50 % 253 303 52
40 % 1018 1233 3
30 % 1775 2144 3
Entity #5 | Chains: E,S
20S proteasome protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 551
95 % 14 40 636 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 40 663
70 % 14 40 715
50 % 253 304 41
40 % 1019 1233 3
30 % 1776 2144 3
Entity #6 | Chains: F,T
20S proteasome protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 25 938
95 % 14 41 637 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 41 664
70 % 14 41 716
50 % 253 303 48
40 % 253 303 68
30 % 1777 2144 3
Entity #7 | Chains: G,U
20S proteasome protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 37 494
95 % 14 41 524 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 14 41 554
70 % 14 41 587
50 % 253 303 39
40 % 253 303 55
30 % 1778 2144 3
Entity #8 | Chains: H,V
20S proteasome protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 21 1065
95 % 14 23 1046 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1080
70 % 14 23 1123
50 % 253 288 66
40 % 253 288 84
30 % 521 596 10
Entity #9 | Chains: I,W
20S proteasome protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 23 852
95 % 14 23 1047 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 14 23 1081
70 % 14 23 1124
50 % 253 303 44
40 % 253 303 62
30 % 253 303 79

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
2 5LEY 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
3 5LF7 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
4 5LF1 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
5 5LF4 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
6 5LF6 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
7 5LF3 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
8 5LEX 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
9 5LEZ 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
10 5LF0 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
11 4R3O 5 E, S Proteasome subunit alpha type-5 UNP RESIDUES 8-241 9606 3.4.25.1 | Details
12 4R67 5 E, S, g, u Proteasome subunit alpha type-5 UNP RESIDUES 8-241 9606 3.4.25.1 | Details
13 3UNB 4 D, R, f, t Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
14 1IRU 5 E, S 20S proteasome 9913
15 3UNF 4 D, R Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
16 3UNE 4 D, R, f, t Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
17 3UNH 4 D, R Proteasome subunit alpha type-5 10090 3.4.25.1 | Details
18 6EPC 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
19 6EPD 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
20 6EPE 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
21 6EPF 5 E Proteasome subunit alpha type-5 10116 3.4.25.1 | Details
22 6AVO 5 H, M Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
23 5VFP 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
24 5VFQ 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
25 5VFR 16 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
26 5VFS 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
27 5VFT 22 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
28 5VFU 22 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
29 5VFO 5 K, k Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
30 5M32 4 D, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
31 5T0G 5 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
32 5T0H 11 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
33 5T0I 11 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
34 5T0J 6 K Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
35 5T0C 23 AK, BK Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
36 5LN3 13 E Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
37 5GJQ 10 F, l Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
38 5GJR 23 F, l Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
39 5L4G 5 E, R Proteasome subunit alpha type-5 9606 3.4.25.1 | Details
40 5A0Q 5 E, S PROTEASOME SUBUNIT ALPHA TYPE-5 9606 3.4.25.1 | Details